Protein Structure
About this Project
Research on protein structure determination and analysis
Related Publications
The Natural Products Magnetic Resonance Database (NP-MRD) for 2025.
Wishart DS; Sajed T; Pin M; Poynton EF; Goel B; Lee BL; Guo AC; Saha S; Sayeeda Z; Han S; Berjanskii M; Peters H; Oler E; Gautam V; Jordan T; Kim J; Ledingham B; Tretter ZM; Koller JT; Shreffler HA; Stillwell LR; Jystad AM; Govind N; Bade JL; Sumner LW; Linington RG; Cort JR
Accurate Prediction of (1)H NMR Chemical Shifts of Small Molecules Using Machine Learning.
Sajed T; Sayeeda Z; Lee BL; Berjanskii M; Wang F; Gautam V; Wishart DS
MagMet: A fully automated web server for targeted nuclear magnetic resonance metabolomics of plasma and serum.
Rout M; Lipfert M; Lee BL; Berjanskii M; Assempour N; Fresno RV; Cayuela AS; Dong Y; Johnson M; Shahin H; Gautam V; Sajed T; Oler E; Peters H; Mandal R; Wishart DS
Rapid and reliable protein structure determination via chemical shift threading
NE Hafsa, MV Berjanskii, D Arndt, DS Wishart
Unraveling the meaning of chemical shifts in protein NMR
MV Berjanskii, DS Wishart
A robust algorithm for optimizing protein structures with NMR chemical shifts
M Berjanskii, D Arndt, Y Liang, DS Wishart
A simple method to measure protein side-chain mobility using NMR chemical shifts.
Berjanskii MV; Wishart DS
Resolution-by-proxy: a simple measure for assessing and comparing the overall quality of NMR protein structures
M Berjanskii, J Zhou, Y Liang, G Lin, DS Wishart
Solution NMR of a 463-residue phosphohexomutase: domain 4 mobility, substates, and phosphoryl transfer defect
AVS Sarma, A Anbanandam, A Kelm, R Mehra-Chaudhary, Y Wei, P Qin, ...
PROSESS: a protein structure evaluation suite and server
M Berjanskii, Y Liang, J Zhou, P Tang, P Stothard, Y Zhou, J Cruz, ...
GeNMR: a web server for rapid NMR-based protein structure determination
M Berjanskii, P Tang, J Liang, JA Cruz, J Zhou, Y Zhou, E Bassett, ...
Application of the random coil index to studying protein flexibility
MV Berjanskii, DS Wishart
CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data
DS Wishart, D Arndt, M Berjanskii, P Tang, J Zhou, G Lin
PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation
S Montgomerie, JA Cruz, S Shrivastava, D Arndt, M Berjanskii, DS Wishart
The RCI server: rapid and accurate calculation of protein flexibility using chemical shifts
MV Berjanskii, DS Wishart
NMR: prediction of protein flexibility
M Berjanskii, DS Wishart
Accurate prediction of protein torsion angles using chemical shifts and sequence homology
S Neal, M Berjanskii, H Zhang, DS Wishart
A simple method to predict protein flexibility using secondary chemical shifts.
Berjanskii MV; Wishart DS
PROTEIN STRUCTURE AND FOLDING-NMR structure of the N-terminal J domain of murine polyomavirus T antigens. Implications for DnaJ-like domains and for mutations of T antigens.
MV Berjanskii, MI Riley, A Xie, V Semenchenko, WR Folk, SRV Doren
TIMP-1 contact sites and perturbations of stromelysin 1 mapped by NMR and a paramagnetic surface probe.
Arumugam S; Hemme CL; Yoshida N; Suzuki K; Nagase H; Berjanskii M; Wu B; Van Doren SR